PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J149100.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 149aa    MW: 16730.3 Da    PI: 9.5199
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J149100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtfskRr+g+ KKA E+ vLCdaev v+ifss gkly+y+s
  Pavir.J149100.2.p  9 KRIENSTNRQVTFSKRRAGLVKKAREIGVLCDAEVGVVIFSSGGKLYDYCS 59
                       79***********************************************96 PP

2K-box645.4e-2271139169
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                        yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+  eL  +e++L+++ ++ R+k 
  Pavir.J149100.2.p  71 YQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHLKGEDLNSLQPTELIAIEEALQNGQTNLRDKL 139
                        89999999**********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-33296IPR002100Transcription factor, MADS-box
CDDcd002652.27E-42280No hitNo description
PRINTSPR004043.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014866.8E-1382139IPR002487Transcription factor, K-box
PROSITE profilePS512979.6484148IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD AEVGVVIFSS GGKLYDYCSP  60
RTSLSRILEM YQTNSGKILW DEKHKSLSAE IDRVKKENDN MQIELRHLKG EDLNSLQPTE  120
LIAIEEALQN GQTNLRDKLA ILLHPLAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-19186178Myocyte-specific enhancer factor 2B
1tqe_Q2e-19186178Myocyte-specific enhancer factor 2B
1tqe_R2e-19186178Myocyte-specific enhancer factor 2B
1tqe_S2e-19186178Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.224780.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929611e-171AJ292961.1 Zea mays mRNA for putative MADS-domain transcription factor (m29 gene).
GenBankBT0542771e-171BT054277.1 Zea mays full-length cDNA clone ZM_BFb0210A14 mRNA, complete cds.
GenBankKJ7269301e-171KJ726930.1 Zea mays clone pUT3475 MADS transcription factor (MADS29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962034.17e-95PREDICTED: MADS-box transcription factor 4-like
SwissprotQ407032e-88MADS4_ORYSJ; MADS-box transcription factor 4
TrEMBLK3Z9J38e-95K3Z9J3_SETIT; Uncharacterized protein
STRINGSi023214m2e-94(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-61MIKC_MADS family protein